OBO Foundry dashboard analysis¶

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/tmp/ipykernel_466/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    3
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 3 11749.000000 7204.067462 3623.0 8947.0 14271.0 15812.0 17353.0
DisjointClasses 3 38.666667 29.091809 11.0 23.5 36.0 52.5 69.0
SubAnnotationPropertyOf 3 27.000000 30.315013 9.0 9.5 10.0 36.0 62.0
SubClassOf 3 1981.666667 1861.236507 33.0 1102.0 2171.0 2956.0 3741.0
Declaration 3 2652.333333 1725.347018 799.0 1872.5 2946.0 3579.0 4212.0
EquivalentClasses 2 630.000000 831.146197 0.0 159.0 318.0 945.0 1572.0
ObjectPropertyDomain 2 50.333333 83.739676 0.0 2.0 4.0 75.5 147.0
ObjectPropertyRange 2 48.666667 80.853777 0.0 2.0 4.0 73.0 142.0
TransitiveObjectProperty 2 16.333333 26.576932 0.0 1.0 2.0 24.5 47.0
InverseObjectProperties 1 37.000000 64.085880 0.0 0.0 0.0 55.5 111.0
SubPropertyChainOf 1 49.666667 86.025190 0.0 0.0 0.0 74.5 149.0
SubObjectPropertyOf 1 226.000000 391.443483 0.0 0.0 0.0 339.0 678.0
Rule 1 8.333333 14.433757 0.0 0.0 0.0 12.5 25.0
IrrefexiveObjectProperty 1 2.333333 4.041452 0.0 0.0 0.0 3.5 7.0
AsymmetricObjectProperty 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
InverseFunctionalObjectProperty 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
FunctionalObjectProperty 1 1.000000 1.732051 0.0 0.0 0.0 1.5 3.0
DisjointObjectProperties 1 3.333333 5.773503 0.0 0.0 0.0 5.0 10.0
DataPropertyRange 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
AnnotationPropertyRangeOf 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
SymmetricObjectProperty 1 26.666667 46.188022 0.0 0.0 0.0 40.0 80.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 3 8897.333333 8758.032104 445.0 4380.0 8315.0 13123.5 17932.0
ObjectIntersectionOf 3 641.000000 839.083429 5.0 165.5 326.0 959.0 1592.0
ObjectSomeValuesFrom 3 1551.000000 2356.898810 19.0 194.0 369.0 2317.0 4265.0
ObjectUnionOf 2 9.000000 12.288206 0.0 2.0 4.0 13.5 23.0
ObjectComplementOf 2 1.000000 1.000000 0.0 0.5 1.0 1.5 2.0
ObjectExactCardinality 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
ObjectMinCardinality 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
ObjectAllValuesFrom 1 3.666667 6.350853 0.0 0.0 0.0 5.5 11.0
ObjectHasSelf 1 1.000000 1.732051 0.0 0.0 0.0 1.5 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
1 pato 0.811 0.956 0.667
0 cl 0.808 0.949 0.667
2 ro 0.756 0.844 0.667

OBO Score Summary

count mean std min 25% 50% 75% max
score 3.0 0.791667 3.092464e-02 0.756 0.7820 0.808 0.8095 0.811
score_dash 3.0 0.916333 6.274021e-02 0.844 0.8965 0.949 0.9525 0.956
score_impact 3.0 0.667000 1.359740e-16 0.667 0.6670 0.667 0.6670 0.667

OBO dependency graph